ready-to-eat seafood:

Overview

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Key numbers

The worker extracted the full PDF text with layout preservation twice and compared extraction hashes before commit. The following lines are copied from numeric/table-bearing regions of the PDF and retain the source units and wording where legible:

• Dubey et al., 2022a,b). products were visualized by electrophoresis in a 1.5% agarose gel
• compared with available sequences (> 97% nucleotide BLAST (Illumina, United States). Sequencing was performed using Illumina
• strains were defined as being resistant to at least one antimicrobial analysis is included in Supplementary Table S1C.
• sequences. Depending on their source of isolation and antimicrobial detection was set at 80%. The profile of virulence factors was visualized
• threshold for AMR gene identification was set at 90%). PlasmidFinder O-antigens, (iv) secretion systems: the genes encoding type II
• set at 80%. MGEs were identified using MobileElementFinder v1.0.3 and cytotonic enterotoxins, and exotoxins. Over 250 genes encoding
• identity of 90%). Circular maps of chromosomes and plasmids were strains, and virulence gene profiles of the 19 genomes were compared
• Considering the ANI cutoff value of ≥ 96% for strains belonging flagellin genes required for optimal polar flagella functions, flaA and
• among our isolates. In addition, an ANI value of 99.9–100% was On the contrary, about 36 genes encoding lateral flagella including
• the reference strains was retrieved from NCBI Genbank (Supplementary Table S1).
• hemolysin HlyA (hlyA), hemolysin III, and thermostable biofilm formation was detected in A. bestiarum strain SU58-3. Iron
• nine strains including A. hydrophila A537, A. bestiarum SU6, virulence gene profile is available in Supplementary Table S3.
• A. salmonicida strains except for OY59. Three strains of isolates (Supplementary Table S2) showed that all isolates were
• Furthermore, the exotoxin A (ETA) gene, toxA was detected in florfenicol and oxolinic acid was observed in 57, 48, and 22% of the
• A. piscicola LJP308, unlike the reference strains. reduced susceptibility (11%) to imipenem was mostly observed in
• about 30% of the strains. One A. salmonicida strain (OY59) was A β-lactamases group including extended spectrum β-lactamases
• presence of different classes of β-lactamases (Table 1). The class B insertion sequence (IS) elements was examined in the 19 Aeromonas
• D β-lactamases group. Identified blaOXA type genes were (Supplementary Table S4). Among the 19 strains, the A. caviae strain
• TABLE 1 Genotypic and phenotypic antimicrobial resistance (AMR) profile of 19 Aeromonas strains isolated from RTE seafood and a salmon processing
• resolution of protein-coding genes or possible horizontal gene transfer and Rosselló-Móra, 2009). Currently, an ANI value of 96% is the
• belonging to the same species showing ≥ 95–96% ANI value (Richter species could be verified by the ANI value ≥ 96%. We also constructed
• the ANI value of 97% between SU58-3 and A. bestiarum, while the previously been identified and found not essential for their virulence
• ANI value was less than 95% between SU58-3 and A. piscicola. (Boyd et al., 2008).
• our study, 47% of 19 Aeromonas strains had the genes encoding the database of VFDB is not fully updated with the genes associated with

Methods (brief)

• (SeaKem, Lonza Group Ltd., Basel, Switzerland) in 1 × TAE buffer. (BioTek Instruments Inc., Winooski, VT, United States). DNA samples
• hydrolyzing the four-membered β-lactam ring of antibiotics, and 2017) and clinical samples (Hilt et al., 2020; Tang et al., 2020).
• Bortolaia, V., Kaas, R. S., Ruppe, E., Roberts, M. C., Schwarz, S., Cattoir, V., et al.
• Girlich, D., Poirel, L., and Nordmann, P. (2011). Diversity of clavulanic acid-inhibited
• Cattoir, V., Poirel, L., Aubert, C., Soussy, C. J., and Nordmann, P. (2008). Unexpected
• Poirel, L., Naas, T., and Nordmann, P. (2010). Diversity, epidemiology, and genetics of
• Merino, S., and Tomás, J. M. (2015). Bacterial capsules and evasion of immune 127–146. doi: 10.1016/j.micpath.2007.05.002
• Talagrand-Reboul, E., Roger, F., Kimper, J. L., Colston, S. M., Graf, J., Latif-Eugenín, F., analysis of chromosomal mcr-3/7 in Aeromonas from U.S. animal-derived samples.
• Zankari, E., Hasman, H., Kaas, R. S., Seyfarth, A. M., Agersø, Y., Lund, O., et al. (2013).

Implications

This page makes the source discoverable for category-level evidence routing. Values remain source-native and should be used only with the stated matrix, species, basis, geography, and censoring context from the paper. The page does not convert total mercury to methylmercury or use total arsenic as inorganic arsenic.

Wiki pages this source may touch

• Fish — marine, non-predatory (sardines, anchovies, salmon, cod)
• Shellfish (shrimp, crab, lobster, clams, oysters, mussels)
• Root-Vegetable Purees
• Mercury
• Tin

Verification notes

• Identity check: DOI, raw handle, candidate cite-key, and SHA-256 were compared against existing wiki/sources/ pages before creation.
• Full-PDF read: pdftotext -layout was run on the full PDF twice; extracted text hashes matched before the page was written.
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• Brand firewall: the worker skips PDFs when extracted numeric lines appear brand/manufacturer-sensitive; this page contains category-level or species-level evidence only.
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Update history

The five most recent substantive edits to this page, classified major (evidence or structure moved), correction (a published value or statement was wrong and has been fixed), or minor (narrative rewritten without changing the underlying evidence). Each description is derived from what the edit did to this page; the linked commit is the authoritative record, routine regeneration passes are excluded, and the full version history lives in git. When DOI minting comes online (see schema docs), each entry below will also link to a version-pinned DataCite DOI.