40 items under this folder.
Bulk ingest report - 2026-07-30
Progress Worker launch 2026-07-30T13:51:13.630Z Root: /Volumes/HMI-Library/heavy-metal-index-raw Batch size: 50 SKIP no-doi | Digest/(330-333)V9N5PT.pdf | sha256 2b8003c1149d2964e0ccece395613aafe586acd62a6e83ddd308f0d82bc2bd43 SKIP brand-firewall | Digest/1-s2.0-S0002916525004563-main.pdf | doi 10.1...
Codex bulk ingest report - 2026-07-27
Scope Requested mode: fast serial source-page ingest, no synthesis / standards / pooling / design.
Codex bulk ingest report - 2026-07-29
Scope Target root: /Volumes/HMI-Library/research-pulls/metal-deep-dive-methylmercury-mehg/Infant formula powder Mode: source-page ingest only, serial, no synthesis/standards/design work Stop rule: newly discovered stopper encountered Completed this run Cite keySource pageCommitNotesdepaiva2019-baby-...
Codex bulk ingest report - 2026-08-03
Progress Batch worker launch 2026-08-03T08:06:26.838Z Root: /Volumes/HMI-Library/research-pulls Batch size: 200 SKIP pdf-local:no-metal-numeric-evidence | heavy-metal-index/Root-vegetable purées/aluminum contamination Root-vegetable purées/978-981-99-3892-6.pdf | doi 10.1007/978-981-99-3892-6 | sha2...
Manual-fetch ingest progress — June 8 Inorganic Arsenic Seaweed
Folder: raw/Manual Fetch Kimi /June 8 Inorganic Arsenic Seaweed/ Date: 2026-06-08 (updated through 10/67) Session: Claude Code (Opus 4.8), interactive, driven via a self-paced /loop of ingest-next-manual-fetch-pdf Purpose: populate HMTc Category 6 (Seafood) Row 5 seaweed-kelp-foods (iAs/tAs/Cd platf...
New Product Proposals - 2026-05-18
coffee-substitutes Proposed category: Instant coffee substitutes (chicory and cereal coffee beverage powders).
P2 Batch 1 Ingest Report
Date: 2026-05-12 Tier: P2 — LOQ source candidates (488 handles in manifest) Sub-batches processed: p2-sub1 (50), p2-sub2 (50), p2-sub3 (50), p2-sub4 (50), remaining-group1 (55), remaining-group2 (55), remaining-group3 (55) 1.
P2 Sub-Batch 3 Ingest Report
Date: 2026-05-12 Batch: 50 papers listed in P2 sub-batch 3 task 1.
P2 Sub-batch 4 Ingest Report
Date: 2026-05-12 Batch: 50 papers from P2 tier Handles: FM_12412015, FM_467049, FM_10005410 through FM_10305879, FM_9965521 1.
P4 Batch 1 Ingest Report
Date: 2026-05-12 Tier: P4 — post-2020 peer-reviewed, high-evidence Handles processed: 200 (sorted year-descending, positions 1–200 of 6,571) Groups: 4 parallel agents of 50 handles each 1.
Codex Papers Cube manual-fetch ingest stop report
Scope Target folder: raw/Papers Cube Manual Fetch Requested cap: N=8 PDFs Run mode: Phase 1 source-page ingest only; Claude audit queue remains downstream Outcome: stopped before ingesting a PDF Inventory PDFs found by following the raw/Papers Cube Manual Fetch symlink: 57 PDFs with exact raw_path: ...
Manual-fetch folder close — June 22 (nickel regulatory/reference set)
Overview Karen added three PDFs to raw/Manual Fetch Kimi /June 22 and requested ingest.
Overnight Ingest Report — 2026-05-14
Overview This report covers all ingest work from the Kimi manual-fetch condiment_papers/ completion (all five subcategories) and the Papers Cube Manual Fetch flat folder (57 PDFs).
P4 Batch 10 — Ingest Report
Date: 2026-05-13 Handles processed: 200 (P4 year-descending, positions 3768–3967; all 2023 cohort) Source pages created: 21 False positives: 178 (89%) Summary Batch 10 spans a uniform 2023 cohort slice (FM_104xx–FM_106xx).
P4 Batch 11 — Ingest Report
Date: 2026-05-13 Handles processed: 200 (P4 year-descending, positions 3968–4167; 2023 cohort) Source pages created: 41 False positives: 159 (79.5%) Summary Batch 11 is the highest-yield single batch to date (41 pages), with a false-positive rate of 79.5% — noticeably lower than recent batches.
P4 Batch 12 — Ingest Report (2026-05-13)
Overview Positions 4168–4367 of the P4 manifest (year-descending sort). FM range approximately FM_11097669 through FM_9998418.
P4 Batch 13 — Ingest Report (2026-05-13)
Overview Positions 4368–4567 of the P4 manifest, sorted by (-year, handle). First handle: FM_9999012 (g1). Last handle: FM_8735667 (g4).
P4 Batch 14 — Ingest Report (2026-05-13)
Overview Positions 4568–4767 of the P4 manifest, sorted by (-year, handle). Year band: 2022.
P4 Batch 15 — Ingest Report (2026-05-13)
Overview Positions 4768–4967 of the P4 manifest, sorted by (-year, handle). Year band: 2022.
P4 Batch 16 — Ingest Report (2026-05-13)
Overview Positions 4968–5167 of the P4 manifest, sorted by (-year, raw_handle). Year band: 2022 (continuing) and early 2021.
P4 Batch 17 — Ingest Report (2026-05-13)
Overview Positions 5168–5367 | 200 handles | 29 source pages | 171 FP (85.5%) Commits: ea6d558 (G1), 05433b8 (G2), 776a085 (G3), ca07956 (G4) Group summary GroupHandlesPagesFPCommitsG1FM_10082116 → FM_12830652842ea6d558G2FM_12844715 → FM_7991624104005433b8G3FM_8009323 → FM_8153660743776a085G4FM_8155...
P4 Batch 5 — Ingest Report
Date: 2026-05-13 Handles processed: 198 (food-matrix-filtered P4, 2025 papers, positions 400–598) Source pages created: 2 False positives / missing from filesystem: 196 Summary Batch 5 reveals a major structural obstacle: a ~400-handle corpus gap spanning roughly FM_12483157 through FM_12519940.
P4 Batch 6 — Ingest Report
Date: 2026-05-13 Handles processed: 199 (food-matrix-filtered P4, positions 600–799 in sorted list) Source pages created: 15 False positives: 184 (92%) Summary Batch 6 cleared positions 600–799 of the food-matrix-filtered P4 sorted list, spanning mostly 2025 papers (153) with 46 from 2024.
P4 Batch 7 — Ingest Report
Date: 2026-05-13 Handles processed: 200 (food-matrix-filtered P4, all 2024, positions 800–999) Source pages created: 16 False positives: 184 (92%) Summary Batch 7 processed the first all-2024 slice (positions 800–999).
P4 Batch 8 — Ingest Report
Date: 2026-05-13 Handles processed: 200 (food-matrix-filtered P4, all 2024, positions 1000–1199) Source pages created: 14 False positives: 186 (93%) Summary Batch 8 continues the all-2024 slice.
P4 Batch 9 — Ingest Report
Date: 2026-05-13 Handles processed: 200 (P4 year-descending, positions 3287–3767; 4 groups of 50) Source pages created: 20 False positives: 180 (90%) Summary Batch 9 spans the year-transition zone between the 2024 and 2023 cohorts.
Batch Report — P1 Priority Tier Ingest
Date: 2026-05-12 Priority tier: P1 (HMT&C Path A concentration candidates) Original manifest P1 count: 46 rows (34 short-form handles + 12 reclassified to P5) Long-name dedup copies skipped: 3 Summary 26 new source pages created.
P4 Batch 2 — Ingest Report
Date: 2026-05-12 Handles processed: 200 (FM_12964337 to FM_11848250, P4 tier, year-descending, pre-food-matrix-filter) Source pages created: 7 False positives: 193 (96.5%) Summary P4 batch 2 confirms the pattern discovered in batch 1: the unfiltered P4 year-descending sort yields ~94–97% false posit...
P4 Batch 3 — Ingest Report
Date: 2026-05-12 Handles processed: 200 (food-matrix-filtered P4 tier, year-descending; first use of food-matrix filter) Net new source pages: 2 Duplicates created and removed: 8 False positives: ~190 Summary Batch 3 was the first batch using the food-matrix-filtered P4 handle list (2,506 → 2,492 ha...
P4 Batch 4 — Ingest Report
Date: 2026-05-12 Handles processed: 200 (food-matrix-filtered P4, 2025 papers, positions 200–400 in filtered list) Source pages created: 12 False positives: 188 (94%) Summary Batch 4 is the first batch with meaningful yield from the food-matrix-filtered strategy: 12 source pages including two high-p...
Batch report: seasonal and geographic variance ingest — 2026-05-12
Overview Processed 95 PDFs from raw/manual-fetch/seasonal-geographic-variance/ (59 in the main folder, 36 in the auto-fetched/ subfolder).
Tier-1→3→4 Sweep Final Summary (cycles 27-35)
Overview This report documents the tier-1→3→4 autonomous-loop sweep that ran from cycle 27 (2026-05-11 fruit-juice mislabel correction) through cycle 35 (final summary).
HMTc Category 5 Beverages — Overnight Final Report — 2026-05-09 (cycles 11-20)
Overview This report covers cycles 11-20 of the autonomous /loop, which built out HMTc Category 5 Beverages from scaffold-only state (Step 0 locked architecture only) to the readiness state Karen specified: at-bar where computable, otherwise fully gap-documented with rationales.
Heavy Metal Index — Cycles 21-26 Extension Final Summary
Overview This report documents the post-cycle-20 extension run (cycles 21-26) triggered by Karen’s directive to (a) continue the re-ingest queue, (b) begin Priority 5, and (c) regenerate the gap report.
Data-Gap Wishlist — 2026-05-09
Overview External candidate papers identified for the HMTc Category 1 data-gap cells via PubMed E-utilities queries.
Infant and Child Foods Overnight Final Report — 2026-05-09
Overview This report covers the day-2 autonomous run under Karen’s overnight Expansion 1 directive (full 16-subcategory Category 1 scope) and Expansion 2 directive (external corpus acquisition via PubMed for data gaps).
Priority 5 — HMTc Product Category Architecture Survey (cycle 23)
Overview This report documents the cycle-23 survey of wiki/products/ for HMTc product category architecture beyond Cat 1 (Infant and Child Foods) and Cat 5 (Beverages).
Digest Ingest Final Report — 2026-05-08
Overview This report covers the autonomous-session Digest ingest run from this evening, complementing the parallel agent’s Phase 6 Infant and Child Foods overnight final report.
Infant and Child Foods Overnight Final Report — 2026-05-08
Overview This report consolidates everything produced overnight under Karen’s autonomous-operation directive.
Row-Fit Re-Sweep — 2026-05-08
Overview Read-only Phase 1 sweep across all wiki/products/*.md pages, applying the row-fit determination rule from CLAUDE.md Part 6 (“trust author scope statements; over-hedging row-fit destroys the value of the source evidence inventory”).